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CD93 CD93 molecule [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102124693, updated on 7-Jun-2024

Summary

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Gene symbol
CD93
Gene description
CD93 molecule
See related
Ensembl:ENSMFAG00000043644
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CD93 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 10 NC_088384.1 (64223659..64230635)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 10 NC_052264.1 (4372108..4379099)

Chromosome 10 - NC_088384.1Genomic Context describing neighboring genes Neighboring gene nuclear transport factor 2 like export factor 1 Neighboring gene uncharacterized LOC123567101 Neighboring gene peptidyl-prolyl cis-trans isomerase A Neighboring gene thrombomodulin Neighboring gene somatostatin receptor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables extracellular matrix protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
complement component C1q receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088384.1 Reference T2T-MFA8v1.0

    Range
    64223659..64230635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005568189.4 → XP_005568246.1  complement component C1q receptor

    See identical proteins and their annotated locations for XP_005568246.1

    UniProtKB/TrEMBL
    A0A2K5VH53
    Related
    ENSMFAP00000024067.1
    Conserved Domains (7) summary
    cd03600
    Location:31 → 184
    CLECT_thrombomodulin_like; C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR
    smart00179
    Location:345 → 369
    EGF_CA; Calcium-binding EGF-like domain
    pfam07645
    Location:385 → 425
    EGF_CA; Calcium-binding EGF domain
    pfam00008
    Location:306 → 334
    EGF; EGF-like domain
    pfam09422
    Location:464 → 549
    WTX; WTX protein
    pfam12662
    Location:326 → 348
    cEGF; Complement Clr-like EGF-like
    pfam14670
    Location:264 → 300
    FXa_inhibition; Coagulation Factor Xa inhibitory site
Nucleotide Protein
Heading Accession and Version

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