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BEND6 BEN domain containing 6 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102120493, updated on 1-Aug-2024

Summary

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Gene symbol
BEND6
Gene description
BEN domain containing 6
See related
Ensembl:ENSMFAG00000030448
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See BEND6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 4 NC_088378.1 (114698893..114773615, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 4 NC_052258.1 (57063620..57138999)

Chromosome 4 - NC_088378.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 451 Neighboring gene KIAA1586 ortholog Neighboring gene ferritin heavy chain-like Neighboring gene oligosaccharyltransferase complex subunit OSTC-like Neighboring gene microtubule-associated protein tau-like Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC102119467 Neighboring gene large ribosomal subunit protein uL22-like Neighboring gene dystonin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEN domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088378.1 Reference T2T-MFA8v1.0

    Range
    114698893..114773615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005552679.4 → XP_005552736.1  BEN domain-containing protein 6 isoform X1

    See identical proteins and their annotated locations for XP_005552736.1

    UniProtKB/TrEMBL
    A0A2K5UQ79
    Related
    ENSMFAP00000014577.1
    Conserved Domains (1) summary
    smart01025
    Location:188 → 266
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_065542914.1 → XP_065398986.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  3. XM_045390242.2 → XP_045246177.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79
    Conserved Domains (1) summary
    smart01025
    Location:188 → 266
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_065542913.1 → XP_065398985.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  5. XM_045390246.2 → XP_045246181.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79
    Conserved Domains (1) summary
    smart01025
    Location:188 → 266
    BEN; The BEN domain is found in diverse animal proteins

  6. XM_065542912.1 → XP_065398984.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  7. XM_065542915.1 → XP_065398987.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  8. XM_065542916.1 → XP_065398988.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  9. XM_065542911.1 → XP_065398983.1  BEN domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A2K5UQ79

  10. XM_045390248.2 → XP_045246183.1  BEN domain-containing protein 6 isoform X2

  11. XM_065542917.1 → XP_065398989.1  BEN domain-containing protein 6 isoform X2

RNA

  1. XR_010586004.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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