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SGPL1 sphingosine-1-phosphate lyase 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102120317, updated on 7-Jun-2024

Summary

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Gene symbol
SGPL1
Gene description
sphingosine-1-phosphate lyase 1
See related
Ensembl:ENSMFAG00000000706
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SGPL1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 9 NC_088383.1 (75552716..75638321, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 9 NC_052263.1 (62244468..62306546, complement)

Chromosome 9 - NC_088383.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107130927 Neighboring gene pterin-4 alpha-carbinolamine dehydratase 1 Neighboring gene putative ribosomal protein eS26-like Neighboring gene thymus, brain and testes associated Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphinganine-1-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate lyase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088383.1 Reference T2T-MFA8v1.0

    Range
    75552716..75638321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065520930.1 → XP_065377002.1  sphingosine-1-phosphate lyase 1 isoform X1

  2. XM_065520927.1 → XP_065376999.1  sphingosine-1-phosphate lyase 1 isoform X1

  3. XM_065520928.1 → XP_065377000.1  sphingosine-1-phosphate lyase 1 isoform X1

  4. XM_065520932.1 → XP_065377004.1  sphingosine-1-phosphate lyase 1 isoform X2

  5. XM_065520925.1 → XP_065376997.1  sphingosine-1-phosphate lyase 1 isoform X1

  6. XM_065520929.1 → XP_065377001.1  sphingosine-1-phosphate lyase 1 isoform X1

  7. XM_065520926.1 → XP_065376998.1  sphingosine-1-phosphate lyase 1 isoform X1

  8. XM_045400106.2 → XP_045256041.1  sphingosine-1-phosphate lyase 1 isoform X2

  9. XM_045400110.2 → XP_045256045.1  sphingosine-1-phosphate lyase 1 isoform X5

    Conserved Domains (1) summary
    cd06450
    Location:144 → 507
    DOPA_deC_like; DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and ...

  10. XM_045400103.2 → XP_045256038.1  sphingosine-1-phosphate lyase 1 isoform X2

  11. XM_045400114.2 → XP_045256049.1  sphingosine-1-phosphate lyase 1 isoform X6

  12. XM_045400109.2 → XP_045256044.1  sphingosine-1-phosphate lyase 1 isoform X4

  13. XM_045400100.2 → XP_045256035.1  sphingosine-1-phosphate lyase 1 isoform X1

  14. XM_045400113.2 → XP_045256048.1  sphingosine-1-phosphate lyase 1 isoform X6

  15. XM_045400108.2 → XP_045256043.1  sphingosine-1-phosphate lyase 1 isoform X3

  16. XM_045400104.2 → XP_045256039.1  sphingosine-1-phosphate lyase 1 isoform X2

  17. XM_045400115.1 → XP_045256050.1  sphingosine-1-phosphate lyase 1 isoform X7

Nucleotide Protein
Heading Accession and Version

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