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VTCN1 V-set domain containing T cell activation inhibitor 1 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 102117075, updated on 10-Oct-2024

Summary

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Gene symbol
VTCN1
Gene description
V-set domain containing T cell activation inhibitor 1
See related
Ensembl:ENSMFAG00000037561
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See VTCN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 1 NC_088375.1 (117164438..117259475)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 1 NC_052255.1 (105732847..105828512)

Chromosome 1 - NC_088375.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein-sorting-associated protein 25-like Neighboring gene mannosidase alpha class 1A member 2 Neighboring gene small ribosomal subunit protein uS8-like Neighboring gene tripartite motif containing 45

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-set domain-containing T-cell activation inhibitor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088375.1 Reference T2T-MFA8v1.0

    Range
    117164438..117259475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015430446.3 → XP_015285932.1  V-set domain-containing T-cell activation inhibitor 1 isoform X4

    UniProtKB/TrEMBL
    A0A2K5W724
    Conserved Domains (2) summary
    smart00410
    Location:43 → 141
    IG_like; Immunoglobulin like
    cl11960
    Location:46 → 143
    Ig; Immunoglobulin domain

  2. XM_015430437.3 → XP_015285923.1  V-set domain-containing T-cell activation inhibitor 1 isoform X1

    UniProtKB/TrEMBL
    A0A2K5W724
    Related
    ENSMFAP00000008014.1
    Conserved Domains (2) summary
    smart00410
    Location:77 → 175
    IG_like; Immunoglobulin like
    cl11960
    Location:80 → 177
    Ig; Immunoglobulin domain

  3. XM_015430465.3 → XP_015285951.1  V-set domain-containing T-cell activation inhibitor 1 isoform X5

    Conserved Domains (2) summary
    cd00096
    Location:5 → 9
    Ig; Ig strand D [structural motif]
    cl11960
    Location:1 → 52
    Ig; Immunoglobulin domain

  4. XM_015430459.3 → XP_015285945.1  V-set domain-containing T-cell activation inhibitor 1 isoform X5

    Conserved Domains (2) summary
    cd00096
    Location:5 → 9
    Ig; Ig strand D [structural motif]
    cl11960
    Location:1 → 52
    Ig; Immunoglobulin domain

  5. XM_015430454.3 → XP_015285940.1  V-set domain-containing T-cell activation inhibitor 1 isoform X5

    Conserved Domains (2) summary
    cd00096
    Location:5 → 9
    Ig; Ig strand D [structural motif]
    cl11960
    Location:1 → 52
    Ig; Immunoglobulin domain

  6. XM_045364833.2 → XP_045220768.1  V-set domain-containing T-cell activation inhibitor 1 isoform X5

    Conserved Domains (2) summary
    cd00096
    Location:5 → 9
    Ig; Ig strand D [structural motif]
    cl11960
    Location:1 → 52
    Ig; Immunoglobulin domain

  7. XM_005542192.4 → XP_005542249.1  V-set domain-containing T-cell activation inhibitor 1 isoform X3

    See identical proteins and their annotated locations for XP_005542249.1

    UniProtKB/TrEMBL
    A0A2K5U6P5, A0A2K5U6S5
    Related
    ENSMFAP00000008020.1
    Conserved Domains (1) summary
    cd20984
    Location:38 → 147
    IgV_B7-H4; Immunoglobulin Variable (IgV) domain of B7-H4

  8. XM_045364801.2 → XP_045220736.1  V-set domain-containing T-cell activation inhibitor 1 isoform X2

  9. XM_065547204.1 → XP_065403276.1  V-set domain-containing T-cell activation inhibitor 1 isoform X5

Nucleotide Protein
Heading Accession and Version

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