U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FAM20B FAM20B glycosaminoglycan xylosylkinase [ Columba livia (rock pigeon) ]

Gene ID: 102097747, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
FAM20B
Gene description
FAM20B glycosaminoglycan xylosylkinase
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FAM20B in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 8 NC_088609.1 (7150965..7177400)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973252.1 (6085389..6111632)

Chromosome 8 - NC_088609.1Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene Ral GEF with PH domain and SH3 binding motif 2 Neighboring gene angiopoietin like 1 Neighboring gene uncharacterized LOC110357811 Neighboring gene torsin family 3 member A Neighboring gene ABL proto-oncogene 2, non-receptor tyrosine kinase

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphotransferase activity, alcohol group as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
glycosaminoglycan xylosylkinase
Names
Protein FAM20B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088609.1 Reference bColLiv1.pat.W.v2

    Range
    7150965..7177400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065071765.1 → XP_064927837.1  glycosaminoglycan xylosylkinase

    UniProtKB/TrEMBL
    A0A2I0MC43

  2. XM_065071767.1 → XP_064927839.1  glycosaminoglycan xylosylkinase

    UniProtKB/TrEMBL
    A0A2I0MC43

  3. XM_005501090.3 → XP_005501147.1  glycosaminoglycan xylosylkinase

    See identical proteins and their annotated locations for XP_005501147.1

    UniProtKB/TrEMBL
    A0A2I0MC43
    Conserved Domains (1) summary
    cd10470
    Location:188 → 394
    FAM20B_C; C-terminal putative kinase domain of FAM20B xylose kinase

  4. XM_065071768.1 → XP_064927840.1  glycosaminoglycan xylosylkinase

    UniProtKB/TrEMBL
    A0A2I0MC43
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.