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LOC102097420 cation-dependent mannose-6-phosphate receptor [ Columba livia (rock pigeon) ]

Gene ID: 102097420, updated on 3-Aug-2024

Summary

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Gene symbol
LOC102097420
Gene description
cation-dependent mannose-6-phosphate receptor
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Also known as
M6PR
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Genomic context

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See LOC102097420 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) Unplaced Scaffold NW_027043811.1 (480407..486520)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973575.1 (265867..269635)

NW_027043811.1Genomic Context describing neighboring genes Neighboring gene alpha-2-macroglobulin Neighboring gene killer cell lectin-like receptor subfamily G member 1 Neighboring gene polyhomeotic-like protein 1 Neighboring gene alpha-2-macroglobulin-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cation-dependent mannose-6-phosphate receptor
Names
mannose-6-phosphate receptor, cation dependent

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NW_027043811.1 Reference bColLiv1.pat.W.v2

    Range
    480407..486520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065048509.1 → XP_064904581.1  cation-dependent mannose-6-phosphate receptor

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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