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LOC102097199 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [ Columba livia (rock pigeon) ]

Gene ID: 102097199, updated on 18-Sep-2024

Summary

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Gene symbol
LOC102097199
Gene description
2-hydroxyacylsphingosine 1-beta-galactosyltransferase
Locus tag
A306_12463
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
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Genomic context

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See LOC102097199 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 6 NC_088607.1 (21613962..21628146, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973223.1 (810718..817248, complement)

Chromosome 6 - NC_088607.1Genomic Context describing neighboring genes Neighboring gene golgi brefeldin A resistant guanine nucleotide exchange factor 1 Neighboring gene paired like homeodomain 3 Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene phosphoinositide-3-kinase adaptor protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acylsphingosine galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in galactosylceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-hydroxyacylsphingosine 1-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088607.1 Reference bColLiv1.pat.W.v2

    Range
    21613962..21628146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065067509.1 → XP_064923581.1  2-hydroxyacylsphingosine 1-beta-galactosyltransferase

  2. XM_065067510.1 → XP_064923582.1  2-hydroxyacylsphingosine 1-beta-galactosyltransferase

Nucleotide Protein
Heading Accession and Version

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