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MARCHF1 membrane associated ring-CH-type finger 1 [ Columba livia (rock pigeon) ]

Gene ID: 102097185, updated on 3-Aug-2024

Summary

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Gene symbol
MARCHF1
Gene description
membrane associated ring-CH-type finger 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Also known as
MARCH1
Orthologs
human mouse all
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Genomic context

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See MARCHF1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 4 NC_088605.1 (42192218..42432737)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973964.1 (186371..401272, complement)

Chromosome 4 - NC_088605.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102085853 Neighboring gene apelin receptor early endogenous ligand Neighboring gene uncharacterized LOC110358794 Neighboring gene translation machinery associated 16 homolog Neighboring gene neuropeptide Y receptor Y5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables MHC protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088605.1 Reference bColLiv1.pat.W.v2

    Range
    42192218..42432737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065061402.1 → XP_064917474.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  2. XM_065061408.1 → XP_064917480.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  3. XM_065061403.1 → XP_064917475.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  4. XM_065061411.1 → XP_064917483.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

  5. XM_065061414.1 → XP_064917486.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

  6. XM_065061417.1 → XP_064917489.1  E3 ubiquitin-protein ligase MARCHF1 isoform X5

  7. XM_065061413.1 → XP_064917485.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

  8. XM_065061410.1 → XP_064917482.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  9. XM_065061405.1 → XP_064917477.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  10. XM_065061407.1 → XP_064917479.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  11. XM_065061412.1 → XP_064917484.1  E3 ubiquitin-protein ligase MARCHF1 isoform X3

  12. XM_065061404.1 → XP_064917476.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  13. XM_065061409.1 → XP_064917481.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

  14. XM_021281207.2 → XP_021136882.2  E3 ubiquitin-protein ligase MARCHF1 isoform X1

  15. XM_065061416.1 → XP_064917488.1  E3 ubiquitin-protein ligase MARCHF1 isoform X4

  16. XM_021281214.2 → XP_021136889.2  E3 ubiquitin-protein ligase MARCHF1 isoform X3

Nucleotide Protein
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