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LOC102097074 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7 [ Columba livia (rock pigeon) ]

Gene ID: 102097074, updated on 3-Aug-2024

Summary

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Gene symbol
LOC102097074
Gene description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7
Locus tag
A306_08480
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Also known as
GCNT7
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Genomic context

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See LOC102097074 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 16 NC_088617.1 (11154067..11162497)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973200.1 (6030516..6038775)

Chromosome 16 - NC_088617.1Genomic Context describing neighboring genes Neighboring gene transcription factor AP-2 gamma Neighboring gene uncharacterized LOC135575587 Neighboring gene replication termination factor 2 Neighboring gene Cas scaffold protein family member 4 Neighboring gene cleavage stimulation factor subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7
Names
glucosaminyl (N-acetyl) transferase family member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088617.1 Reference bColLiv1.pat.W.v2

    Range
    11154067..11162497
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065032460.1 → XP_064888532.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  2. XM_065032459.1 → XP_064888531.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  3. XM_065032461.1 → XP_064888533.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  4. XM_013371314.3 → XP_013226768.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623
    Conserved Domains (1) summary
    cl27418
    Location:113 → 376
    Branch; Core-2/I-Branching enzyme

  5. XM_065032462.1 → XP_064888534.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  6. XM_005499619.3 → XP_005499676.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    See identical proteins and their annotated locations for XP_005499676.1

    UniProtKB/TrEMBL
    A0A2I0M623
    Conserved Domains (1) summary
    cl27418
    Location:113 → 376
    Branch; Core-2/I-Branching enzyme

  7. XM_065032463.1 → XP_064888535.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  8. XM_065032464.1 → XP_064888536.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    UniProtKB/TrEMBL
    A0A2I0M623

  9. XM_005499621.3 → XP_005499678.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7

    See identical proteins and their annotated locations for XP_005499678.1

    UniProtKB/TrEMBL
    A0A2I0M623
    Conserved Domains (1) summary
    cl27418
    Location:113 → 376
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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