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SUMF1 sulfatase modifying factor 1 [ Columba livia (rock pigeon) ]

Gene ID: 102096028, updated on 3-Aug-2024

Summary

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Gene symbol
SUMF1
Gene description
sulfatase modifying factor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See SUMF1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 10 NC_088611.1 (10071417..10104262)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973684.1 (407539..440232)

Chromosome 10 - NC_088611.1Genomic Context describing neighboring genes Neighboring gene basic helix-loop-helix family member e40 Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene uncharacterized LOC110365253 Neighboring gene leucine rich repeat neuronal 1 Neighboring gene cereblon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formylglycine-generating enzyme
Names
Sulfatase-modifying factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088611.1 Reference bColLiv1.pat.W.v2

    Range
    10071417..10104262
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065074604.1 → XP_064930676.1  formylglycine-generating enzyme isoform X3

  2. XM_065074602.1 → XP_064930674.1  formylglycine-generating enzyme isoform X1

  3. XM_065074603.1 → XP_064930675.1  formylglycine-generating enzyme isoform X2

  4. XM_065074605.1 → XP_064930677.1  formylglycine-generating enzyme isoform X4

  5. XM_065074607.1 → XP_064930679.1  formylglycine-generating enzyme isoform X5

    UniProtKB/TrEMBL
    R7VPP5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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