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SLC5A1 solute carrier family 5 member 1 [ Columba livia (rock pigeon) ]

Gene ID: 102095628, updated on 10-Oct-2024

Summary

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Gene symbol
SLC5A1
Gene description
solute carrier family 5 member 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Also known as
SGLT1
Orthologs
human mouse all
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Genomic context

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See SLC5A1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 17 NC_088618.1 (9653164..9701583, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973299.1 (899623..947117, complement)

Chromosome 17 - NC_088618.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135575620 Neighboring gene RAB36, member RAS oncogene family Neighboring gene radial spoke head 14 homolog Neighboring gene G protein subunit alpha z Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta Neighboring gene anomalous homeobox

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ontogeny of nutrient transporter and digestive enzyme gene expression in domestic pigeon (Columba livia) intestine and yolk sac membrane during pre- and posthatch development. Dong XY, et al. Poult Sci, 2012 Aug. PMID 22802193
  2. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-glucose:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sodium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium/glucose cotransporter 1
Names
sodium glucose transporter 1
solute carrier family 5 (sodium/glucose cotransporter), member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088618.1 Reference bColLiv1.pat.W.v2

    Range
    9653164..9701583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021289572.2 → XP_021145247.1  sodium/glucose cotransporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I0LZ64
    Conserved Domains (1) summary
    cl00456
    Location:1 → 614
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_065033229.1 → XP_064889301.1  sodium/glucose cotransporter 1 isoform X2

  3. XM_021289573.2 → XP_021145248.1  sodium/glucose cotransporter 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I0LZ64
    Conserved Domains (1) summary
    cl00456
    Location:1 → 614
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_005503898.3 → XP_005503955.1  sodium/glucose cotransporter 1 isoform X1

    See identical proteins and their annotated locations for XP_005503955.1

    UniProtKB/TrEMBL
    A0A2I0LZ58, A0A2I0LZ64
    Conserved Domains (1) summary
    cl00456
    Location:11 → 644
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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