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SC5D sterol-C5-desaturase [ Columba livia (rock pigeon) ]

Gene ID: 102095349, updated on 3-Aug-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Locus tag
A306_08677
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 24
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 24 NC_088625.1 (5333765..5337562, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973536.1 (665143..668502)

Chromosome 24 - NC_088625.1Genomic Context describing neighboring genes Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC110363764 Neighboring gene 5S ribosomal RNA Neighboring gene uncharacterized LOC135576296 Neighboring gene tectorin alpha Neighboring gene tubulin folding cofactor E like Neighboring gene glutamate ionotropic receptor kainate type subunit 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
Lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088625.1 Reference bColLiv1.pat.W.v2

    Range
    5333765..5337562 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065040563.1 → XP_064896635.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A2I0LS80

  2. XM_005509160.4 → XP_005509217.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A2I0LS80
    Conserved Domains (1) summary
    COG3000
    Location:43 → 259
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  3. XM_065040564.1 → XP_064896636.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A2I0LS80
Nucleotide Protein
Heading Accession and Version

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