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GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 [ Columba livia (rock pigeon) ]

Gene ID: 102094735, updated on 3-Aug-2024

Summary

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Gene symbol
GALNT4
Gene description
polypeptide N-acetylgalactosaminyltransferase 4
Locus tag
A306_06778
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See GALNT4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (164244524..164249333, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973485.1 (715005..718754, complement)

Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135576479 Neighboring gene uncharacterized LOC135576478 Neighboring gene dual specificity phosphatase 6 Neighboring gene POC1 centriolar protein B Neighboring gene ATPase plasma membrane Ca2+ transporting 1 Neighboring gene collagen alpha-1(III) chain-like Neighboring gene uncharacterized LOC135576488 Neighboring gene uncharacterized LOC135576492

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 4
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088602.1 Reference bColLiv1.pat.W.v2

    Range
    164244524..164249333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005508310.3 → XP_005508367.1  polypeptide N-acetylgalactosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A2I0LWG5
    Conserved Domains (2) summary
    cd02510
    Location:143 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:451 → 579
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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