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INPP5F inositol polyphosphate-5-phosphatase F [ Columba livia (rock pigeon) ]

Gene ID: 102094457, updated on 3-Aug-2024

Summary

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Gene symbol
INPP5F
Gene description
inositol polyphosphate-5-phosphatase F
Locus tag
A306_01928
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See INPP5F in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 6 NC_088607.1 (6180388..6223386, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004974440.1 (384766..393900)

Chromosome 6 - NC_088607.1Genomic Context describing neighboring genes Neighboring gene SEC23 interacting protein Neighboring gene minichromosome maintenance complex binding protein Neighboring gene uncharacterized LOC110356256 Neighboring gene BAG cochaperone 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-4-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of endocytic recycling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositide phosphatase SAC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088607.1 Reference bColLiv1.pat.W.v2

    Range
    6180388..6223386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065066872.1 → XP_064922944.1  phosphatidylinositide phosphatase SAC2 isoform X1

    UniProtKB/TrEMBL
    A0A2I0MEZ9

  2. XM_021282881.2 → XP_021138556.2  phosphatidylinositide phosphatase SAC2 isoform X3

  3. XM_065066873.1 → XP_064922945.1  phosphatidylinositide phosphatase SAC2 isoform X2

  4. XM_065066874.1 → XP_064922946.1  phosphatidylinositide phosphatase SAC2 isoform X4

Nucleotide Protein
Heading Accession and Version

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