U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Columba livia (rock pigeon) ]

Gene ID: 102094186, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
A306_06774
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TMTC3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (163696531..163730554)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973485.1 (172216..199414)

Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein C12orf50-like Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene uncharacterized LOC110363174 Neighboring gene KIT ligand Neighboring gene uncharacterized LOC110363202

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyl-transferase TMTC3
Names
Transmembrane and TPR repeat-containing protein 3
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088602.1 Reference bColLiv1.pat.W.v2

    Range
    163696531..163730554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065042063.1 → XP_064898135.1  protein O-mannosyl-transferase TMTC3

  2. XM_065042071.1 → XP_064898143.1  protein O-mannosyl-transferase TMTC3

  3. XM_065042078.1 → XP_064898150.1  protein O-mannosyl-transferase TMTC3

  4. XM_065042086.1 → XP_064898158.1  protein O-mannosyl-transferase TMTC3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.