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DSEL dermatan sulfate epimerase like [ Columba livia (rock pigeon) ]

Gene ID: 102091970, updated on 3-Aug-2024

Summary

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Gene symbol
DSEL
Gene description
dermatan sulfate epimerase like
Locus tag
A306_08255
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See DSEL in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 2 NC_088603.1 (104604124..104611142)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973191.1 (310431..318754)

Chromosome 2 - NC_088603.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135578592 Neighboring gene uncharacterized LOC135578591 Neighboring gene uncharacterized LOC110361054 Neighboring gene cadherin 19 Neighboring gene uncharacterized LOC110361072

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chondroitin-glucuronate 5-epimerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dermatan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dermatan-sulfate epimerase-like protein
Names
Dermatan-sulfate epimerase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088603.1 Reference bColLiv1.pat.W.v2

    Range
    104604124..104611142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065053057.1 → XP_064909129.1  dermatan-sulfate epimerase-like protein

    UniProtKB/TrEMBL
    A0A2I0MVY2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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