U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLD1 phospholipase D1 [ Columba livia (rock pigeon) ]

Gene ID: 102090500, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
PLD1
Gene description
phospholipase D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLD1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 9 NC_088610.1 (12683579..12759942)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973751.1 (667531..772593)

Chromosome 9 - NC_088610.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110365923 Neighboring gene uncharacterized LOC110365922 Neighboring gene uncharacterized LOC135580242 Neighboring gene TRAF2 and NCK interacting kinase Neighboring gene solute carrier family 2 member 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of microvillus assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phospholipase D1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088610.1 Reference bColLiv1.pat.W.v2

    Range
    12683579..12759942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065073844.1 → XP_064929916.1  phospholipase D1 isoform X1

    UniProtKB/TrEMBL
    A0A2I0MBI0

  2. XM_065073845.1 → XP_064929917.1  phospholipase D1 isoform X1

    UniProtKB/TrEMBL
    A0A2I0MBI0

  3. XM_005512011.3 → XP_005512068.1  phospholipase D1 isoform X1

    See identical proteins and their annotated locations for XP_005512068.1

    UniProtKB/TrEMBL
    A0A2I0MBI0
    Conserved Domains (1) summary
    cl26365
    Location:80 → 1060
    PLN03008; Phospholipase D delta

  4. XM_065073846.1 → XP_064929918.1  phospholipase D1 isoform X2

    UniProtKB/TrEMBL
    A0A2I0MBG5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.