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SGCD sarcoglycan delta [ Columba livia (rock pigeon) ]

Gene ID: 102089672, updated on 3-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 14
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 14 NC_088615.1 (5283015..5609701, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973290.1 (2309594..2823363, complement)

Chromosome 14 - NC_088615.1Genomic Context describing neighboring genes Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4 Neighboring gene mediator complex subunit 7 Neighboring gene uncharacterized LOC135575404 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
Delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088615.1 Reference bColLiv1.pat.W.v2

    Range
    5283015..5609701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065029705.1 → XP_064885777.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2I0LWI6

  2. XM_065029700.1 → XP_064885772.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I0LWK0

  3. XM_065029701.1 → XP_064885773.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I0LWK0

  4. XM_065029702.1 → XP_064885774.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I0LWK0

  5. XM_005503362.4 → XP_005503419.1  delta-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_005503419.1

    UniProtKB/TrEMBL
    A0A2I0LWK0
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_065029703.1 → XP_064885775.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I0LWK0

  7. XM_021288986.2 → XP_021144661.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I0LWK0
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_065029706.1 → XP_064885778.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2I0LWI6
Nucleotide Protein
Heading Accession and Version

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