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INPP5B inositol polyphosphate-5-phosphatase B [ Columba livia (rock pigeon) ]

Gene ID: 102089265, updated on 3-Aug-2024

Summary

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Gene symbol
INPP5B
Gene description
inositol polyphosphate-5-phosphatase B
Locus tag
A306_09238
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See INPP5B in Genome Data Viewer
Location:
chromosome: 26
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 26 NC_088627.1 (1977438..1991048)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973569.1 (1752800..1765987, complement)

Chromosome 26 - NC_088627.1Genomic Context describing neighboring genes Neighboring gene splicing factor 3a subunit 3 Neighboring gene uncharacterized LOC102089456 Neighboring gene metal regulatory transcription factor 1 Neighboring gene uncharacterized LOC135576413 Neighboring gene yrdC N6-threonylcarbamoyltransferase domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol-1,4,5-trisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type II inositol 1,4,5-trisphosphate 5-phosphatase
Names
Type II inositol-1,4,5-trisphosphate 5-phosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088627.1 Reference bColLiv1.pat.W.v2

    Range
    1977438..1991048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065041424.1 → XP_064897496.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X3

  2. XM_065041423.1 → XP_064897495.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X2

  3. XM_065041422.1 → XP_064897494.1  type II inositol 1,4,5-trisphosphate 5-phosphatase isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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