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SMPD3 sphingomyelin phosphodiesterase 3 [ Columba livia (rock pigeon) ]

Gene ID: 102088815, updated on 3-Aug-2024

Summary

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Gene symbol
SMPD3
Gene description
sphingomyelin phosphodiesterase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See SMPD3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 13 NC_088614.1 (20643021..20741784, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973422.1 (2438756..2525099, complement)

Chromosome 13 - NC_088614.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135575315 Neighboring gene uncharacterized LOC135575374 Neighboring gene uncharacterized LOC110362314 Neighboring gene phospholipase A2 group XV Neighboring gene leukotriene B4 receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088614.1 Reference bColLiv1.pat.W.v2

    Range
    20643021..20741784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065028508.1 → XP_064884580.1  sphingomyelin phosphodiesterase 3

    UniProtKB/TrEMBL
    A0A2I0M7U6

  2. XM_005507113.4 → XP_005507170.1  sphingomyelin phosphodiesterase 3

    See identical proteins and their annotated locations for XP_005507170.1

    UniProtKB/TrEMBL
    A0A2I0M7U6
    Conserved Domains (1) summary
    cd09078
    Location:345 → 653
    nSMase; Neutral sphingomyelinases (nSMase) catalyze the hydrolysis of sphingomyelin in biological membranes to ceramide and phosphorylcholine
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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