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NDST2 N-deacetylase and N-sulfotransferase 2 [ Columba livia (rock pigeon) ]

Gene ID: 102086332, updated on 3-Aug-2024

Summary

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Gene symbol
NDST2
Gene description
N-deacetylase and N-sulfotransferase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See NDST2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 6 NC_088607.1 (22673517..22811294, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973223.1 (1848829..1990992, complement)

Chromosome 6 - NC_088607.1Genomic Context describing neighboring genes Neighboring gene neurotrypsin Neighboring gene zinc finger SWIM-type containing 8 Neighboring gene uncharacterized LOC135579773 Neighboring gene calcium/calmodulin dependent protein kinase II gamma Neighboring gene uncharacterized LOC110357166

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
Names
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088607.1 Reference bColLiv1.pat.W.v2

    Range
    22673517..22811294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065067531.1 → XP_064923603.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  2. XM_065067533.1 → XP_064923605.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  3. XM_065067530.1 → XP_064923602.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  4. XM_065067532.1 → XP_064923604.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  5. XM_065067534.1 → XP_064923606.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  6. XM_065067535.1 → XP_064923607.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  7. XM_065067538.1 → XP_064923610.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  8. XM_065067536.1 → XP_064923608.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  9. XM_065067537.1 → XP_064923609.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    UniProtKB/TrEMBL
    A0A2I0MFK2

  10. XM_005500070.3 → XP_005500127.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2

    See identical proteins and their annotated locations for XP_005500127.1

    UniProtKB/TrEMBL
    A0A2I0MFK2
    Conserved Domains (2) summary
    pfam00685
    Location:599 → 850
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:25 → 510
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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