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SLC39A8 solute carrier family 39 member 8 [ Columba livia (rock pigeon) ]

Gene ID: 102086264, updated on 3-Aug-2024

Summary

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Gene symbol
SLC39A8
Gene description
solute carrier family 39 member 8
Locus tag
A306_15883
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See SLC39A8 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 4 NC_088605.1 (73532980..73599272)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004974491.1 (5196366..5262335)

Chromosome 4 - NC_088605.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135579453 Neighboring gene ubiquitin conjugating enzyme E2 D3 Neighboring gene mannosidase beta Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene B cell scaffold protein with ankyrin repeats 1 Neighboring gene uncharacterized LOC135579452 Neighboring gene protein phosphatase 3 catalytic subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic cation:bicarbonate symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular monoatomic cation homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metal cation symporter ZIP8
Names
Zinc transporter ZIP8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088605.1 Reference bColLiv1.pat.W.v2

    Range
    73532980..73599272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005515263.3 → XP_005515320.3  metal cation symporter ZIP8

RNA

  1. XR_002409490.2 RNA Sequence

  2. XR_010472579.1 RNA Sequence

  3. XR_010472578.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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