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ALOX5 arachidonate 5-lipoxygenase [ Columba livia (rock pigeon) ]

Gene ID: 102085004, updated on 18-Sep-2024

Summary

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Gene symbol
ALOX5
Gene description
arachidonate 5-lipoxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See ALOX5 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 6 NC_088607.1 (17951754..17991900, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973175.1 (23265..55984, complement)

Chromosome 6 - NC_088607.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 2H2-like Neighboring gene cytochrome P450 2H1-like Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene zinc finger AN1-type containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate 5-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arachidonate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hepoxilin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipoxygenase pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyunsaturated fatty acid 5-lipoxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088607.1 Reference bColLiv1.pat.W.v2

    Range
    17951754..17991900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065067331.1 → XP_064923403.1  polyunsaturated fatty acid 5-lipoxygenase isoform X4

  2. XM_021293833.2 → XP_021149508.2  polyunsaturated fatty acid 5-lipoxygenase isoform X2

  3. XM_065067329.1 → XP_064923401.1  polyunsaturated fatty acid 5-lipoxygenase isoform X1

  4. XM_005497973.3 → XP_005498030.2  polyunsaturated fatty acid 5-lipoxygenase isoform X3

  5. XM_065067332.1 → XP_064923404.1  polyunsaturated fatty acid 5-lipoxygenase isoform X5

Nucleotide Protein
Heading Accession and Version

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