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VTCN1 V-set domain containing T cell activation inhibitor 1 [ Columba livia (rock pigeon) ]

Gene ID: 102084462, updated on 3-Aug-2024

Summary

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Gene symbol
VTCN1
Gene description
V-set domain containing T cell activation inhibitor 1
Locus tag
A306_07236
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See VTCN1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 1 NC_088602.1 (126620088..126634273, complement)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973265.1 (13756015..13768139, complement)

Chromosome 1 - NC_088602.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 16, RNA N6-adenosine Neighboring gene tumor necrosis factor receptor superfamily member 1A Neighboring gene CST telomere replication complex component 1 Neighboring gene tripartite motif containing 45 Neighboring gene spindle and centriole associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
V-set domain-containing T-cell activation inhibitor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088602.1 Reference bColLiv1.pat.W.v2

    Range
    126620088..126634273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065077685.1 → XP_064933757.1  V-set domain-containing T-cell activation inhibitor 1 isoform X2

  2. XM_065077693.1 → XP_064933765.1  V-set domain-containing T-cell activation inhibitor 1 isoform X1

  3. XM_005502667.4 → XP_005502724.2  V-set domain-containing T-cell activation inhibitor 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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