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CSPG5 chondroitin sulfate proteoglycan 5 [ Columba livia (rock pigeon) ]

Gene ID: 102084189, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Columba livia
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 2 NC_088603.1 (1270713..1279500)
102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973760.1 (2087127..2092930, complement)

Chromosome 2 - NC_088603.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110366014 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene uncharacterized LOC135578779 Neighboring gene elongator acetyltransferase complex subunit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColLiv1.pat.W.v2

Genomic

  1. NC_088603.1 Reference bColLiv1.pat.W.v2

    Range
    1270713..1279500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065054955.1 → XP_064911027.1  chondroitin sulfate proteoglycan 5 isoform X1

  2. XM_065054957.1 → XP_064911029.1  chondroitin sulfate proteoglycan 5 isoform X3

  3. XM_065054958.1 → XP_064911030.1  chondroitin sulfate proteoglycan 5 isoform X4

  4. XM_065054956.1 → XP_064911028.1  chondroitin sulfate proteoglycan 5 isoform X2

  5. XM_065054959.1 → XP_064911031.1  chondroitin sulfate proteoglycan 5 isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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