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ATRN attractin [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102074978, updated on 3-Aug-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
See related
Ensembl:ENSZALG00000007026
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081719.1 (1492217..1607914, complement)

NW_005081719.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase domain 33 Neighboring gene GDNF family receptor alpha-4 Neighboring gene uncharacterized LOC113460052

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081719 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081719.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    1492217..1607914 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026797043.1 → XP_026652844.1  attractin

    UniProtKB/TrEMBL
    A0A8D2MG22
    Related
    ENSZALP00000008121.1, ENSZALT00000011462.1
    Conserved Domains (6) summary
    cd00041
    Location:48 → 156
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:967 → 1012
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:410 → 459
    Kelch; KELCH repeat [structural motif]
    pfam01437
    Location:837 → 888
    PSI; Plexin repeat
    cl02432
    Location:697 → 825
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl28614
    Location:255 → 518
    BTB; Broad-Complex, Tramtrack and Bric a brac
Nucleotide Protein
Heading Accession and Version

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