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LOC102073780 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102073780, updated on 3-Aug-2024

Summary

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Gene symbol
LOC102073780
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
See related
Ensembl:ENSZALG00000009703
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Also known as
NDST3
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC102073780 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081797.1 (437940..484944)

NW_005081797.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113460263 Neighboring gene uncharacterized LOC113460262 Neighboring gene uncharacterized LOC113460264 Neighboring gene small nucleolar RNA SNORA24 Neighboring gene serine protease 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081797 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
Names
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081797.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    437940..484944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005495013.2 → XP_005495070.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

    UniProtKB/TrEMBL
    A0A8D2MR16, A0A8D2MRC8
    Related
    ENSZALP00000011505.1, ENSZALT00000015900.1
    Conserved Domains (2) summary
    pfam00685
    Location:592 → 843
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 503
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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