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MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102073758, updated on 3-Aug-2024

Summary

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Gene symbol
MDGA1
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 1
See related
Ensembl:ENSZALG00000011099
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See MDGA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081620.1 (275780..367678)

NW_005081620.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene coiled-coil domain containing 167 Neighboring gene cap methyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081620 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081620.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    275780..367678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026795113.1 → XP_026650914.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1

    UniProtKB/TrEMBL
    A0A8D2MUE0
    Related
    ENSZALP00000013525.1, ENSZALT00000018449.1
    Conserved Domains (5) summary
    smart00408
    Location:261 → 322
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:159 → 224
    IG; Immunoglobulin
    pfam00629
    Location:754 → 918
    MAM; MAM domain, meprin/A5/mu
    pfam13927
    Location:446 → 521
    Ig_3; Immunoglobulin domain
    cl28434
    Location:341 → 425
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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