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NYX nyctalopin [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102073713, updated on 3-Aug-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
See related
Ensembl:ENSZALG00000002492
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See NYX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081607.1 (3952103..3958826, complement)

NW_005081607.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 82 Neighboring gene G protein-coupled receptor 34 Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene ribosomal protein L8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081607 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081607.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    3952103..3958826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014268424.2 → XP_014123899.1  nyctalopin

    UniProtKB/TrEMBL
    A0A8D2M4X2
    Related
    ENSZALP00000002245.1, ENSZALT00000003886.1
    Conserved Domains (6) summary
    smart00082
    Location:329 → 363
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:79 → 211
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:61 → 80
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:25 → 54
    LRRNT; Leucine rich repeat N-terminal domain
    pfam12799
    Location:223 → 264
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:199 → 257
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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