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CHODL chondrolectin [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102073533, updated on 3-Aug-2024

Summary

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Gene symbol
CHODL
Gene description
chondrolectin
See related
Ensembl:ENSZALG00000016471
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CHODL in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081581.1 (4762162..4773510, complement)

NW_005081581.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102069944 Neighboring gene transmembrane serine protease 15 Neighboring gene chromosome unknown C21orf91 homolog Neighboring gene ragulator complex protein LAMTOR1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081581 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of axonogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondrolectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081581.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    4762162..4773510 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014267114.2 → XP_014122589.1  chondrolectin isoform X6

    Related
    ENSZALP00000020980.1, ENSZALT00000027433.1
    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  2. XM_014267112.2 → XP_014122587.1  chondrolectin isoform X4

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  3. XM_014267113.2 → XP_014122588.1  chondrolectin isoform X5

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  4. XM_014267109.2 → XP_014122584.1  chondrolectin isoform X1

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  5. XM_014267110.2 → XP_014122585.1  chondrolectin isoform X2

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  6. XM_026793556.1 → XP_026649357.1  chondrolectin isoform X3

  7. XM_014267111.2 → XP_014122586.1  chondrolectin isoform X3

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin

  8. XM_026793557.1 → XP_026649358.1  chondrolectin isoform X3

    Conserved Domains (1) summary
    cd03595
    Location:31 → 184
    CLECT_chondrolectin_like; C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin
Nucleotide Protein
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