U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DYSF dysferlin [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102072676, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
DYSF
Gene description
dysferlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
64
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081719.1 (3392..88417)

NW_005081719.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 26B1 Neighboring gene uncharacterized LOC113460051

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005081719 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081719.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    3392..88417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026797034.1 → XP_026652835.1  dysferlin

    Conserved Domains (12) summary
    cd04011
    Location:215 → 324
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1625 → 1753
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:850 → 1023
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1982 → 2105
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:7 → 135
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:2216 → 2310
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:1415 → 1471
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:1256 → 1328
    FerB; FerB (NUC096) domain
    pfam08151
    Location:793 → 843
    FerI; FerI (NUC094) domain
    pfam08165
    Location:1167 → 1224
    FerA; FerA (NUC095) domain
    pfam16165
    Location:2322 → 2412
    Ferlin_C; Ferlin C-terminus
    cl27773
    Location:1646 → 2086
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.