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CHSY3 chondroitin sulfate synthase 3 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102072652, updated on 3-Aug-2024

Summary

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Gene symbol
CHSY3
Gene description
chondroitin sulfate synthase 3
See related
Ensembl:ENSZALG00000000580
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See CHSY3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081571.1 (2582106..2725350, complement)

NW_005081571.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113459176 Neighboring gene uncharacterized LOC102072527 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 19 Neighboring gene membrane integral NOTCH2 associated receptor 2 Neighboring gene uncharacterized LOC113459170

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081571 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081571.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    2582106..2725350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005486226.3 → XP_005486283.1  chondroitin sulfate synthase 3

    UniProtKB/TrEMBL
    A0A8D2LZP2
    Related
    ENSZALP00000000489.1, ENSZALT00000000832.1
    Conserved Domains (2) summary
    pfam05679
    Location:299 → 836
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:145 → 369
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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