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GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102072423, updated on 3-Aug-2024

Summary

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Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
See related
Ensembl:ENSZALG00000012372
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See GPCPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081615.1 (684158..726204, complement)

NW_005081615.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S5 Neighboring gene mal, T cell differentiation protein Neighboring gene shieldin complex subunit 1 Neighboring gene chromogranin B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081615 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1
Names
glycerophosphocholine phosphodiesterase GDE1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081615.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    684158..726204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005489364.3 → XP_005489421.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    See identical proteins and their annotated locations for XP_005489421.1

    UniProtKB/TrEMBL
    A0A8D2N1N8
    Conserved Domains (3) summary
    cd05814
    Location:4 → 126
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 611
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  2. XM_005489363.3 → XP_005489420.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    See identical proteins and their annotated locations for XP_005489420.1

    UniProtKB/TrEMBL
    A0A8D2N1N8
    Related
    ENSZALP00000014992.1, ENSZALT00000020276.1
    Conserved Domains (3) summary
    cd05814
    Location:4 → 126
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 611
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  3. XM_014268708.2 → XP_014124183.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N1N8
    Related
    ENSZALP00000014993.1, ENSZALT00000020277.1
    Conserved Domains (3) summary
    cd05814
    Location:4 → 126
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
    pfam03009
    Location:323 → 611
    GDPD; Glycerophosphoryl diester phosphodiesterase family

  4. XM_026794918.1 → XP_026650719.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2N1M7
    Related
    ENSZALP00000014991.1, ENSZALT00000020275.1
Nucleotide Protein
Heading Accession and Version

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