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CHKA choline kinase alpha [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102071312, updated on 3-Aug-2024

Summary

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Gene symbol
CHKA
Gene description
choline kinase alpha
See related
Ensembl:ENSZALG00000005201
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See CHKA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081665.1 (1281104..1303414, complement)

NW_005081665.1Genomic Context describing neighboring genes Neighboring gene USP6 N-terminal-like protein Neighboring gene ribonuclease/angiogenin inhibitor 1 Neighboring gene lysine methyltransferase 5B Neighboring gene uncharacterized protein C11orf24 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081665 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ethanolamine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-choline pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylethanolamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline kinase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081665.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    1281104..1303414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005491619.3 → XP_005491676.1  choline kinase alpha isoform X2

    UniProtKB/TrEMBL
    A0A8D2MCR3
    Related
    ENSZALP00000005588.1, ENSZALT00000008280.1
    Conserved Domains (2) summary
    PLN02236
    Location:86 → 424
    PLN02236; choline kinase
    cd05156
    Location:100 → 421
    ChoK_euk; Euykaryotic Choline Kinase

  2. XM_005491618.3 → XP_005491675.1  choline kinase alpha isoform X1

    UniProtKB/TrEMBL
    A0A8D2MA43
    Related
    ENSZALP00000005585.1, ENSZALT00000008277.1
    Conserved Domains (2) summary
    PLN02236
    Location:86 → 442
    PLN02236; choline kinase
    cd05156
    Location:100 → 439
    ChoK_euk; Euykaryotic Choline Kinase
Nucleotide Protein
Heading Accession and Version

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