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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102070788, updated on 3-Aug-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
See related
Ensembl:ENSZALG00000012548
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081686.1 (2225475..2233844)

NW_005081686.1Genomic Context describing neighboring genes Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene XK related 8 Neighboring gene replication protein A2 Neighboring gene small Cajal body-specific RNA 1 Neighboring gene protein phosphatase 1 regulatory subunit 8 Neighboring gene syntaxin 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081686 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081686.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    2225475..2233844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014270843.2 → XP_014126318.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

    Conserved Domains (2) summary
    cd00842
    Location:1 → 246
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:8 → 204
    Metallophos; Calcineurin-like phosphoesterase

  2. XM_014270842.2 → XP_014126317.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    UniProtKB/TrEMBL
    A0A8D2QH18
    Related
    ENSZALP00000015246.1, ENSZALT00000020569.1
    Conserved Domains (2) summary
    cd00842
    Location:1 → 246
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:8 → 204
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

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