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PLCB1 phospholipase C beta 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102069763, updated on 3-Aug-2024

Summary

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Gene symbol
PLCB1
Gene description
phospholipase C beta 1
See related
Ensembl:ENSZALG00000010033
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See PLCB1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081577.1 (4723821..5028221)

NW_005081577.1Genomic Context describing neighboring genes Neighboring gene hydroxyacid oxidase 1 Neighboring gene thioredoxin related transmembrane protein 4 Neighboring gene uncharacterized LOC106629378 Neighboring gene uncharacterized LOC113459240 Neighboring gene phospholipase C beta 4 Neighboring gene lysosomal associated membrane protein family member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081577 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in memory IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081577.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    4723821..5028221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005486821.2 → XP_005486878.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A8D2MS06, A0A8D2MTJ2
    Related
    ENSZALP00000011903.1, ENSZALT00000016419.1
    Conserved Domains (7) summary
    cd00275
    Location:679 → 798
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:317 → 645
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    PLN02952
    Location:217 → 786
    PLN02952; phosphoinositide phospholipase C
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam06631
    Location:905 → 941
    DUF1154; Protein of unknown function (DUF1154)
    pfam08703
    Location:1004 → 1142
    PLC-beta_C; PLC-beta C terminal
    pfam09279
    Location:225 → 315
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like

  2. XM_005486820.2 → XP_005486877.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A8D2MTJ2, A0A8D2QF02
    Related
    ENSZALP00000011911.1, ENSZALT00000016428.1
    Conserved Domains (7) summary
    cd00275
    Location:679 → 798
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:317 → 645
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    PLN02952
    Location:217 → 786
    PLN02952; phosphoinositide phospholipase C
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam06631
    Location:905 → 941
    DUF1154; Protein of unknown function (DUF1154)
    pfam08703
    Location:1004 → 1173
    PLC-beta_C; PLC-beta C terminal
    pfam09279
    Location:225 → 315
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like

  3. XM_005486822.3 → XP_005486879.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A8D2MTJ2
    Related
    ENSZALP00000011906.1, ENSZALT00000016423.1
    Conserved Domains (7) summary
    cd00275
    Location:679 → 798
    C2_PLC_like; C2 domain present in Phosphoinositide-specific phospholipases C (PLC)
    cd08591
    Location:317 → 645
    PI-PLCc_beta; Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta
    PLN02952
    Location:217 → 786
    PLN02952; phosphoinositide phospholipase C
    cd13361
    Location:22 → 149
    PH_PLC_beta; Phospholipase C-beta (PLC-beta) pleckstrin homology (PH) domain
    pfam06631
    Location:905 → 941
    DUF1154; Protein of unknown function (DUF1154)
    pfam08703
    Location:1004 → 1142
    PLC-beta_C; PLC-beta C terminal
    pfam09279
    Location:225 → 315
    EF-hand_like; Phosphoinositide-specific phospholipase C, efhand-like
Nucleotide Protein
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