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CHPF chondroitin polymerizing factor [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102069696, updated on 3-Aug-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
See related
Ensembl:ENSZALG00000015482
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081562.1 (6412140..6417289, complement)

NW_005081562.1Genomic Context describing neighboring genes Neighboring gene rac GTPase-activating protein 1 Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene inhibin subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081562 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081562.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    6412140..6417289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005485234.3 → XP_005485291.1  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A8D2N7J3
    Related
    ENSZALP00000019553.1, ENSZALT00000025692.1
    Conserved Domains (2) summary
    pfam05679
    Location:258 → 758
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:191 → 224
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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