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PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102069546, updated on 3-Aug-2024

Summary

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Gene symbol
PAFAH1B1
Gene description
platelet activating factor acetylhydrolase 1b regulatory subunit 1
See related
Ensembl:ENSZALG00000012400
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See PAFAH1B1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081674.1 (265581..274682, complement)

NW_005081674.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 92B Neighboring gene clustered mitochondria homolog Neighboring gene MAX network transcriptional repressor Neighboring gene small G protein signaling modulator 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081674 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
platelet-activating factor acetylhydrolase IB subunit alpha
Names
lissencephaly-1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081674.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    265581..274682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005491958.3 → XP_005492015.1  platelet-activating factor acetylhydrolase IB subunit alpha

    See identical proteins and their annotated locations for XP_005492015.1

    UniProtKB/TrEMBL
    A0A8D2N1A9
    Related
    ENSZALP00000015026.1, ENSZALT00000020319.1
    Conserved Domains (3) summary
    smart00667
    Location:7 → 39
    LisH; Lissencephaly type-1-like homology motif
    cd00200
    Location:104 → 408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:111 → 148
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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