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LOC102069513 putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102069513, updated on 3-Aug-2024

Summary

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Gene symbol
LOC102069513
Gene description
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
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Genomic context

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See LOC102069513 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081557.1 (8971391..8992773)

NW_005081557.1Genomic Context describing neighboring genes Neighboring gene UDP-N-acetylglucosamine transferase subunit ALG13 homolog Neighboring gene serine rich and transmembrane domain containing 2 Neighboring gene transient receptor potential cation channel subfamily C member 5 Neighboring gene angiomotin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081557 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081557.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    8971391..8992773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026791922.1 → XP_026647723.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

    Conserved Domains (3) summary
    cd04508
    Location:234 → 282
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:1 → 50
    OTU; OTU-like cysteine protease
    cl26464
    Location:322 → 784
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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