U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HADH hydroxyacyl-CoA dehydrogenase [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102067248, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
HADH
Gene description
hydroxyacyl-CoA dehydrogenase
See related
Ensembl:ENSZALG00000005522
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HADH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081558.1 (6133263..6150687, complement)

NW_005081558.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L34 Neighboring gene lymphoid enhancer binding factor 1 Neighboring gene cytochrome P450 2U1 Neighboring gene sphingomyelin synthase 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005081558 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081558.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    6133263..6150687 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005484687.3 → XP_005484744.1  hydroxyacyl-coenzyme A dehydrogenase, mitochondrial

    UniProtKB/TrEMBL
    A0A8D2MB79
    Related
    ENSZALP00000005989.1, ENSZALT00000008812.1
    Conserved Domains (3) summary
    COG1250
    Location:26 → 312
    FadB; 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
    pfam00725
    Location:215 → 312
    3HCDH; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
    pfam02737
    Location:28 → 213
    3HCDH_N; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.