U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ALKBH8 alkB homolog 8, tRNA methyltransferase [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102066464, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
ALKBH8
Gene description
alkB homolog 8, tRNA methyltransferase
See related
Ensembl:ENSZALG00000012735
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ALKBH8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081545.1 (12391809..12436157)

NW_005081545.1Genomic Context describing neighboring genes Neighboring gene sarcolipin Neighboring gene ELMO domain containing 1 Neighboring gene CWF19 like cell cycle control factor 2 Neighboring gene vitelline membrane outer layer protein 1-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_005081545 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alkylated DNA repair protein alkB homolog 8
Names
alkB, alkylation repair homolog 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081545.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    12391809..12436157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005482563.3 → XP_005482620.1  alkylated DNA repair protein alkB homolog 8 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N332
    Related
    ENSZALP00000015555.1, ENSZALT00000020935.1
    Conserved Domains (3) summary
    cd12431
    Location:43 → 124
    RRM_ALKBH8; RNA recognition motif in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    pfam08241
    Location:418 → 507
    Methyltransf_11; Methyltransferase domain
    cl21496
    Location:138 → 300
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_026790697.1 → XP_026646498.1  alkylated DNA repair protein alkB homolog 8 isoform X2

    UniProtKB/TrEMBL
    A0A8D2N307
    Related
    ENSZALP00000015556.1, ENSZALT00000020936.1
    Conserved Domains (3) summary
    cd12431
    Location:43 → 124
    RRM_ALKBH8; RNA recognition motif in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    pfam08241
    Location:386 → 475
    Methyltransf_11; Methyltransferase domain
    cl21496
    Location:170 → 268
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_026790696.1 → XP_026646497.1  alkylated DNA repair protein alkB homolog 8 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N332

  4. XM_014264018.2 → XP_014119493.1  alkylated DNA repair protein alkB homolog 8 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N332
    Conserved Domains (3) summary
    cd12431
    Location:43 → 124
    RRM_ALKBH8; RNA recognition motif in alkylated DNA repair protein alkB homolog 8 (ALKBH8) and similar proteins
    pfam08241
    Location:418 → 507
    Methyltransf_11; Methyltransferase domain
    cl21496
    Location:138 → 300
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.