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SCD stearoyl-CoA desaturase [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102063760, updated on 3-Aug-2024

Summary

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Gene symbol
SCD
Gene description
stearoyl-CoA desaturase
See related
Ensembl:ENSZALG00000012912
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human all
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Genomic context

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See SCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081541.1 (10968762..10989539)

NW_005081541.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family G member 2 Neighboring gene uncharacterized LOC113460878 Neighboring gene polycystin 2 like 1, transient receptor potential cation channel Neighboring gene SEC31 homolog B, COPII coat complex component Neighboring gene Wnt family member 8B Neighboring gene NADH:ubiquinone oxidoreductase subunit B8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081541 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables palmitoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables stearoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA desaturase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081541.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    10968762..10989539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005481277.3 → XP_005481334.1  acyl-CoA desaturase

    UniProtKB/TrEMBL
    A0A8D2MYR5
    Related
    ENSZALP00000015821.1, ENSZALT00000021229.1
    Conserved Domains (2) summary
    cd03505
    Location:98 → 338
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
    pfam00487
    Location:102 → 307
    FA_desaturase; Fatty acid desaturase
Nucleotide Protein
Heading Accession and Version

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