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ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102062420, updated on 3-Aug-2024

Summary

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Gene symbol
ORMDL1
Gene description
ORMDL sphingolipid biosynthesis regulator 1
See related
Ensembl:ENSZALG00000014596
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See ORMDL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081578.1 (5440844..5444599, complement)

NW_005081578.1Genomic Context describing neighboring genes Neighboring gene ASNSD1 upstream open reading frame Neighboring gene asparagine synthetase domain containing 1 Neighboring gene O-sialoglycoprotein endopeptidase like 1 Neighboring gene PMS1 homolog 1, mismatch repair system component Neighboring gene uncharacterized LOC113459256 Neighboring gene myostatin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081578 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular sphingolipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ORM1-like protein 1
Names
ORM1-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081578.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    5440844..5444599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014266933.1 → XP_014122408.1  ORM1-like protein 1

    UniProtKB/TrEMBL
    A0A8D2QHY7
    Related
    ENSZALP00000018187.1, ENSZALT00000024103.1
    Conserved Domains (1) summary
    pfam04061
    Location:11 → 146
    ORMDL; ORMDL family
Nucleotide Protein
Heading Accession and Version

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