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EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102062116, updated on 3-Aug-2024

Summary

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Gene symbol
EDEM3
Gene description
ER degradation enhancing alpha-mannosidase like protein 3
See related
Ensembl:ENSZALG00000014853
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See EDEM3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081580.1 (740364..765541)

NW_005081580.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC113459291 Neighboring gene ring finger protein 2 Neighboring gene niban apoptosis regulator 1 Neighboring gene chromosome unknown C1orf21 homolog Neighboring gene tRNA splicing endonuclease subunit 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081580 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081580.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    740364..765541
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005487041.3 → XP_005487098.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8D2N571
    Related
    ENSZALP00000018569.1, ENSZALT00000024546.1
    Conserved Domains (2) summary
    cd02126
    Location:665 → 791
    PA_EDEM3_like; PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar ...
    pfam01532
    Location:60 → 499
    Glyco_hydro_47; Glycosyl hydrolase family 47

  2. XM_005487042.3 → XP_005487099.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X2

    Conserved Domains (3) summary
    cd02126
    Location:665 → 791
    PA_EDEM3_like; PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar ...
    pfam01532
    Location:60 → 499
    Glyco_hydro_47; Glycosyl hydrolase family 47
    pfam05466
    Location:793 → 913
    BASP1; Brain acid soluble protein 1 (BASP1 protein)

  3. XM_005487043.3 → XP_005487100.1  ER degradation-enhancing alpha-mannosidase-like protein 3 isoform X3

    Conserved Domains (3) summary
    cd02126
    Location:665 → 791
    PA_EDEM3_like; PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar ...
    pfam01532
    Location:60 → 499
    Glyco_hydro_47; Glycosyl hydrolase family 47
    pfam05466
    Location:793 → 908
    BASP1; Brain acid soluble protein 1 (BASP1 protein)
Nucleotide Protein
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