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AMACR alpha-methylacyl-CoA racemase [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102061662, updated on 3-Aug-2024

Summary

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Gene symbol
AMACR
Gene description
alpha-methylacyl-CoA racemase
See related
Ensembl:ENSZALG00000008219
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Orthologs
human mouse all
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Genomic context

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See AMACR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081604.1 (1252255..1271604, complement)

NW_005081604.1Genomic Context describing neighboring genes Neighboring gene relaxin family peptide receptor 3 Neighboring gene solute carrier family 45 member 2 Neighboring gene C1q and TNF related 3 Neighboring gene retinoic acid induced 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081604 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-methylacyl-CoA racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-methylacyl-CoA racemase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081604.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    1252255..1271604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005488789.3 → XP_005488846.1  alpha-methylacyl-CoA racemase isoform X1

    UniProtKB/TrEMBL
    A0A8D2MMI8
    Related
    ENSZALP00000009578.1, ENSZALT00000013357.1
    Conserved Domains (1) summary
    COG1804
    Location:3 → 377
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

  2. XM_005488790.3 → XP_005488847.1  alpha-methylacyl-CoA racemase isoform X2

    Conserved Domains (1) summary
    COG1804
    Location:70 → 360
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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