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HACD1 3-hydroxyacyl-CoA dehydratase 1 [ Zonotrichia albicollis (white-throated sparrow) ]

Gene ID: 102061253, updated on 3-Aug-2024

Summary

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Gene symbol
HACD1
Gene description
3-hydroxyacyl-CoA dehydratase 1
See related
Ensembl:ENSZALG00000015549
Gene type
protein coding
RefSeq status
MODEL
Organism
Zonotrichia albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passerellidae; Zonotrichia
Also known as
PTPLA
Orthologs
human mouse all
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Genomic context

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See HACD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Zonotrichia_albicollis-1.0.1 (GCF_000385455.1) Unplaced Scaffold NW_005081538.1 (4845090..4863544, complement)

NW_005081538.1Genomic Context describing neighboring genes Neighboring gene vimentin Neighboring gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 Neighboring gene signal transducing adaptor molecule Neighboring gene mannose receptor C-type 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005081538 Unplaced Scaffold Reference Zonotrichia_albicollis-1.0.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1
Names
protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Zonotrichia albicollis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zonotrichia_albicollis-1.0.1

Genomic

  1. NW_005081538.1 Reference Zonotrichia_albicollis-1.0.1

    Range
    4845090..4863544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005480295.3 → XP_005480352.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8D2NAK5
    Related
    ENSZALP00000019667.1, ENSZALT00000025816.1
    Conserved Domains (1) summary
    pfam04387
    Location:77 → 236
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  2. XM_005480296.3 → XP_005480353.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X1

    Conserved Domains (1) summary
    pfam04387
    Location:77 → 234
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  3. XM_026795660.1 → XP_026651461.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X3

    Conserved Domains (1) summary
    pfam04387
    Location:13 → 163
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  4. XM_026795657.1 → XP_026651458.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 isoform X2

    Conserved Domains (1) summary
    pfam04387
    Location:13 → 165
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

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