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SUMF1 sulfatase modifying factor 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102045152, updated on 3-Aug-2024

Summary

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Gene symbol
SUMF1
Gene description
sulfatase modifying factor 1
See related
Ensembl:ENSGFOG00000007775
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See SUMF1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054420.1 (1005473..1025057, complement)

NW_005054420.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat neuronal 1 Neighboring gene histone-lysine N-methyltransferase SETMAR Neighboring gene inositol 1,4,5-trisphosphate receptor type 1 Neighboring gene basic helix-loop-helix family member e40

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054420 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
formylglycine-generating enzyme

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054420.1 Reference GeoFor_1.0

    Range
    1005473..1025057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031061621.1 → XP_030917481.1  formylglycine-generating enzyme

    UniProtKB/TrEMBL
    A0A8N5I1Y1
    Related
    ENSGFOP00000011287.1, ENSGFOT00000011663.1
    Conserved Domains (1) summary
    pfam03781
    Location:1 → 276
    FGE-sulfatase; Sulfatase-modifying factor enzyme 1
Nucleotide Protein
Heading Accession and Version

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