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COLEC10 collectin subfamily member 10 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102044392, updated on 3-Aug-2024

Summary

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Gene symbol
COLEC10
Gene description
collectin subfamily member 10
See related
Ensembl:ENSGFOG00000006007
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See COLEC10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054321.1 (3497904..3515360)

NW_005054321.1Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 12 Neighboring gene TNF receptor superfamily member 11b Neighboring gene mal, T cell differentiation protein 2 Neighboring gene cellular communication network factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054321 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
collectin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054321.1 Reference GeoFor_1.0

    Range
    3497904..3515360
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005420694.2 → XP_005420751.1  collectin-10

    UniProtKB/TrEMBL
    A0A6I9HHT7
    Related
    ENSGFOP00000008540.1, ENSGFOT00000008827.1
    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:45 → 86
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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