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HS6ST1 heparan sulfate 6-O-sulfotransferase 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102044194, updated on 3-Aug-2024

Summary

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Gene symbol
HS6ST1
Gene description
heparan sulfate 6-O-sulfotransferase 1
See related
Ensembl:ENSGFOG00000011009
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See HS6ST1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054388.1 (2832711..3026309)

NW_005054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115948396 Neighboring gene family with sequence similarity 168 member B Neighboring gene pleckstrin homology domain containing B2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054388 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054388.1 Reference GeoFor_1.0

    Range
    2832711..3026309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005425526.3 → XP_005425583.1  heparan-sulfate 6-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A6I9HP95
    Related
    ENSGFOP00000016195.1, ENSGFOT00000016728.1
    Conserved Domains (1) summary
    pfam03567
    Location:82 → 347
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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