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CHSY1 chondroitin sulfate synthase 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102043414, updated on 3-Aug-2024

Summary

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Gene symbol
CHSY1
Gene description
chondroitin sulfate synthase 1
See related
Ensembl:ENSGFOG00000009653
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See CHSY1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054366.1 (1053146..1118940, complement)

NW_005054366.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family member A3 Neighboring gene leucine rich repeat kinase 1 Neighboring gene selenoprotein S Neighboring gene small nuclear ribonucleoprotein polypeptide A'

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054366 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054366.1 Reference GeoFor_1.0

    Range
    1053146..1118940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014308345.2 → XP_014163820.1  chondroitin sulfate synthase 1

    UniProtKB/TrEMBL
    A0A6I9ZB18
    Related
    ENSGFOP00000014098.1, ENSGFOT00000014562.1
    Conserved Domains (2) summary
    pfam05679
    Location:88 → 627
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:8 → 158
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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Gene LinkOut

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